Only document the public API, not the whole source tree.

include/doxyfile

@@ -124,10 +124,7 @@ FULL_PATH_NAMES        = YES
 # If left blank the directory from which doxygen is run is used as the 
 # path to strip.
 
-STRIP_FROM_PATH        = ../ \
-                         C:/source/svn.libsdl.org/trunk/ \
-                         C:\source\svn.libsdl.org\trunk\ \
-                         ..\
+STRIP_FROM_PATH        =
 
 # The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of 
 # the path mentioned in the documentation of a class, which tells 
@@ -572,7 +569,7 @@ WARN_LOGFILE           = ./doxygen_warn.txt
 # directories like "/usr/src/myproject". Separate the files or directories 
 # with spaces.
 
-INPUT                  = ..
+INPUT                  = .
 
 # This tag can be used to specify the character encoding of the source files 
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is 
@@ -652,10 +649,7 @@ EXCLUDE_SYMLINKS       = NO
 # against the file with absolute path, so to exclude all test directories 
 # for example use the pattern */test/*
 
-EXCLUDE_PATTERNS       = */.svn/* \
-                         */bin/* \
-                         */lib/* \
-                         */obj/*
+EXCLUDE_PATTERNS       =
 
 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names 
 # (namespaces, classes, functions, etc.) that should be excluded from the 
@@ -669,9 +663,7 @@ EXCLUDE_SYMBOLS        =
 # directories that contain example code fragments that are included (see 
 # the \include command).
 
-EXAMPLE_PATH           = ../test \
-                         ../Xcode \
-                         ../Xcode-iPhoneOS
+EXAMPLE_PATH           =
 
 # If the value of the EXAMPLE_PATH tag contains directories, you can use the 
 # EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp